SMTL ID : 7ki6.1

Structure of the HeV F glycoprotein in complex with the 1F5 neutralizing antibody

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.414, T.418, G.430, K.431 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: N.464 Chain G: P.448, Q.459, M.463 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain D: N.414, T.418, G.430, K.431 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain A: P.448, Q.459, M.463 Chain D: N.464 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain G: N.414, T.418, G.430, K.431 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain D: P.448, Q.459, M.463 Chain G: N.464 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 4 residues within 4Å: Chain A: G.92, E.95, L.96, N.99 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.95 Hydrogen bonds: A:E.95, A:E.95, A:E.95, A:N.99 NAG.8: 2 residues within 4Å: Chain A: N.67 Chain G: Q.194 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain A Hydrogen bonds: G:Q.194, A:N.155 NAG.9: 4 residues within 4Å: Chain D: G.92, E.95, L.96, N.99 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:E.95 Hydrogen bonds: D:E.95, D:E.95, D:E.95, D:N.99 NAG.10: 2 residues within 4Å: Chain A: Q.194 Chain D: N.67 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:N.155, A:Q.194 NAG.11: 4 residues within 4Å: Chain G: G.92, E.95, L.96, N.99 5 PLIP interactions: 5 interactions with chain G Hydrophobic interactions: G:E.95 Hydrogen bonds: G:E.95, G:E.95, G:E.95, G:N.99 NAG.12: 2 residues within 4Å: Chain D: Q.194 Chain G: N.67 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain G Hydrogen bonds: D:Q.194, G:N.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dang, H.V. et al., Broadly neutralizing antibody cocktails targeting Nipah virus and Hendra virus fusion glycoproteins. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-05-05

Peptides

Fusion glycoprotein F0: ADG
1F5 Fab light chain: BEH
1F5 heavy chain: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

G
E

B
L

E
C

H
F

C
H

F
D

I
G

Fusion glycoprotein F0

1F5 Fab light chain

1F5 heavy chain