SMTL ID : 7kja.1 (1 other biounit)

Crystal structure of the EphA2 intracellular KD-SAM domains

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Y.8, E.9, N.148, Y.149, V.150, R.152 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.9, A:N.148, A:V.150, A:V.150, A:R.152 GOL.3: 5 residues within 4Å: Chain A: L.16, K.17, F.18, T.19, T.20 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.19

1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.2: 20 residues within 4Å: Chain A: I.33, G.34, A.35, G.36, E.37, F.38, V.41, A.58, K.60, I.90, T.106, E.107, Y.108, M.109, E.110, G.112, A.113, L.160, D.171 Ligands: MG.4 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:E.37, A:K.60, A:T.106, A:T.106, A:M.109 Water bridges: A:F.38, A:A.113, A:D.153, A:D.171 Salt bridges: A:K.60

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 3 residues within 4Å: Chain A: K.60, D.171 Ligands: ACP.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.171, H2O.1, H2O.2, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lechtenberg, B.C. et al., Regulation of the EphA2 receptor intracellular region by phosphomimetic negative charges in the kinase-SAM linker. Nat Commun (2021)

Release Date

2021-02-03

Peptides

Ephrin type-A receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ephrin type-A receptor 2

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