SMTL ID : 7kje.1

F96S epi-isozizaene synthase: complex with 3 Mg2+ and neridronate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: R.215, N.261, E.269 Ligands: NRD.5 No protein-ligand interaction detected (PLIP) MG.2: 5 residues within 4Å: Chain A: D.120, Y.193, E.196 Ligands: MG.3, NRD.5 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.120, H2O.1, H2O.2, H2O.3, H2O.3 MG.3: 4 residues within 4Å: Chain A: D.120, D.124 Ligands: MG.2, NRD.5 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.120, H2O.1, H2O.1, H2O.2

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: R.184, H.185, R.241, K.242, R.247 8 PLIP interactions: 8 interactions with chain A Water bridges: A:R.184, A:R.247, A:R.247 Salt bridges: A:R.184, A:H.185, A:R.241, A:K.242, A:R.247

1 x NRD: (6-azanyl-1-oxidanyl-1-phosphono-hexyl)phosphonic acid(Covalent)

NRD.5: 12 residues within 4Å: Chain A: L.93, D.120, R.215, F.219, N.261, W.346, V.350, F.353, H.354 Ligands: MG.1, MG.2, MG.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.219 Hydrogen bonds: A:D.120, A:R.215 Water bridges: A:Y.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ronnebaum, T.A. et al., An Aromatic Cluster in the Active Site of epi -Isozizaene Synthase Is an Electrostatic Toggle for Divergent Terpene Cyclization Pathways. Biochemistry (2020)

Release Date

2020-12-16

Peptides

epi-isozizaene synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

epi-isozizaene synthase

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