SMTL ID : 7kjh.1 (1 other biounit)

Plasmodium falciparum protein Pf12p bound to nanobody B9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

2 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 8 residues within 4Å: Chain A: T.28, S.30, W.53, R.72 Chain B: K.253, I.273, L.274, Y.275 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:T.28, A:S.30, B:Y.275 Water bridges: A:R.72, B:K.253, B:K.253 Salt bridges: A:R.72, B:K.253 FLC.2: 6 residues within 4Å: Chain A: F.37, R.45, F.47, H.50, R.99, Y.107 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.47, A:F.47 Hydrogen bonds: A:Y.107, A:Y.107 Water bridges: A:R.45, A:F.47 Salt bridges: A:R.45, A:H.50, A:R.99

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain B: E.159, K.163, N.164 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dietrich, M.H. et al., Nanobody generation and structural characterization of Plasmodium falciparum 6-cysteine protein Pf12p. Biochem.J. (2021)

Release Date

2021-02-03

Peptides

Nanobody B9: A
Surface protein P12p: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Nanobody B9

Surface protein P12p

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