SMTL ID : 7km9.1

Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor SDDC-0001913, tetragonal crystal from

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 28 residues within 4Å: Chain A: W.16, A.17, I.24, G.25, R.26, G.28, G.29, I.30, G.53, R.54, R.55, T.56, S.59, V.75, T.76, R.77, Q.78, G.90, I.108, G.109, G.110, A.111, Q.112, I.113, Y.114, L.116, A.140 Ligands: WPJ.2 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:T.56 Hydrogen bonds: A:A.17, A:I.24, A:R.26, A:G.28, A:G.28, A:G.53, A:R.54, A:R.54, A:R.55, A:R.55, A:R.55, A:T.56, A:S.59, A:T.76, A:R.77, A:R.77, A:Q.78, A:Q.78, A:G.109, A:G.110, A:A.111, A:Q.112, A:I.113 Water bridges: A:R.26, A:R.55, A:R.77, A:R.77, A:R.77, A:Q.112 Salt bridges: A:R.54, A:R.55 pi-Cation interactions: A:R.77, A:R.77

1 x WPJ: (2R)-2-[(3-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid(Non-covalent)

WPJ.2: 18 residues within 4Å: Chain A: I.15, W.16, A.17, I.30, D.37, L.38, F.41, K.42, L.60, P.61, H.64, L.67, P.68, R.70, I.108, Y.114, T.127 Ligands: NAP.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.30, A:L.38, A:L.38, A:L.38, A:F.41 Hydrogen bonds: A:I.15, A:Y.114, A:T.127, A:T.127 Salt bridges: A:D.37, A:K.42, A:R.70

2 x BR: BROMIDE ION(Non-functional Binders)(Non-covalent)

BR.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP BR.4: 1 residues within 4Å: Chain A: R.33 Ligand excluded by PLIP

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain A: Y.170 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor SDDC-0001913, tetragonal crystal form. to be published

Release Date

2021-07-07

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydrofolate reductase

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