SMTL ID : 7ko0.1

Crystal structure of the second bromodomain (BD2) of human BRD4 bound to SG3-179

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 5W2: 4-[[4-[[3-(~{tert}-butylsulfonylamino)-4-chloranyl-phenyl]amino]-5-methyl-pyrimidin-2-yl]amino]-2-fluoranyl-~{N}-(1-methylpiperidin-4-yl)benzamide(Non-covalent)

5W2.1: 13 residues within 4Å: Chain A: W.26, P.27, F.28, V.32, L.37, L.39, C.81, Y.84, N.85, H.89, E.90, V.91, M.94 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.26, A:W.26, A:P.27, A:F.28, A:V.32, A:L.37, A:L.39, A:L.39, A:E.90 Hydrogen bonds: A:P.27, A:N.85, A:N.85

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: I.45, I.46, K.47, H.48, L.76, N.80, K.83 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.47, A:H.48, A:H.48, A:N.80, A:K.83, A:K.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. (2021)

Release Date

2021-10-20

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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