SMTL ID : 7koh.2 (3 other biounits)

Crystal structure of antigen 43 from Escherichia coli EDL933

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

monomer

Ligands

8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 5 residues within 4Å: Chain A: F.458, H.459, K.460, S.485, Q.487 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.460 PEG.2: 3 residues within 4Å: Chain A: S.153, L.177, H.196 No protein-ligand interaction detected (PLIP) PEG.3: 3 residues within 4Å: Chain A: R.248, V.267, R.300 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.248, A:R.248, A:R.300 PEG.4: 2 residues within 4Å: Chain A: S.297, G.317 No protein-ligand interaction detected (PLIP) PEG.5: 3 residues within 4Å: Chain A: G.132, G.133, T.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.162, A:T.162 PEG.6: 4 residues within 4Å: Chain A: L.280, N.311, S.330, T.332 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.332, A:T.332 PEG.8: 1 residues within 4Å: Chain A: S.555 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.555 PEG.9: 1 residues within 4Å: Chain A: N.386 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.386

3 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.7: 4 residues within 4Å: Chain A: I.275, G.276, T.277, N.282 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.276, A:G.276 P6G.10: 5 residues within 4Å: Chain A: R.71, V.73, S.92, N.94, H.111 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.71, A:S.92, A:N.94 P6G.11: 5 residues within 4Å: Chain A: S.165, T.166, T.167, D.184, L.186 No protein-ligand interaction detected (PLIP)

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 3 residues within 4Å: Chain A: G.225, N.244, E.246 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.244, A:E.246 GOL.13: 4 residues within 4Å: Chain A: K.498, W.500, G.534, A.537 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.500, A:G.534 GOL.14: 2 residues within 4Å: Chain A: R.478, S.482 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.478, A:S.482 GOL.15: 6 residues within 4Å: Chain A: E.107, W.109, Y.126, S.128, K.130, K.158 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.107, A:W.109, A:S.128, A:K.130, A:K.130, A:K.158 GOL.16: 2 residues within 4Å: Chain A: D.87, N.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.104 GOL.17: 3 residues within 4Å: Chain A: N.287, G.288, H.307 No protein-ligand interaction detected (PLIP) GOL.18: 5 residues within 4Å: Chain A: A.321, V.322, S.323, I.340, A.341 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.341

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vo, J.L. et al., Variation of Antigen 43 self-association modulates bacterial compacting within aggregates and biofilms. NPJ Biofilms Microbiomes (2022)

Release Date

2022-03-09

Peptides

Antigen 43: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Antigen 43

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