SMTL ID : 7kp8.1

asymmetric mTNF-alpha hTNFR1 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

hetero-3-2-mer

Ligands

1 x A7G: 1-{[2-(difluoromethoxy)phenyl]methyl}-2-methyl-6-[6-(piperazin-1-yl)pyridin-3-yl]-1H-benzimidazole(Non-covalent)

A7G.1: 18 residues within 4Å: Chain A: L.48, V.113, A.146, L.147 Chain B: L.48, Y.50, Y.109, G.111, I.145, L.147 Chain C: L.48, Y.50, Y.109, L.110, G.111, G.112, Y.141, L.147 6 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: A:L.48, A:V.113, A:L.147, C:Y.109, B:Y.109 pi-Stacking: C:Y.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McMillan, D. et al., Structural insights into the disruption of TNF-TNFR1 signalling by small molecules stabilising a distorted TNF. Nat Commun (2021)

Release Date

2021-01-13

Peptides

Tumor necrosis factor: ABC
Tumor necrosis factor receptor superfamily member 1A: DE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

Tumor necrosis factor

Tumor necrosis factor receptor superfamily member 1A