- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.23 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x MYA: TETRADECANOYL-COA(Non-covalent)
MYA.1: 13 residues within 4Å:- Chain A: K.12, Y.52, L.55, R.58, F.60, L.64, R.88, T.94, R.105, V.112, G.113, N.115, H.118
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:K.12, A:Y.52, A:R.88, A:R.88, A:T.94, A:R.105, A:N.115
- Water bridges: A:G.119
- Salt bridges: A:K.12, A:R.58, A:H.118
- pi-Stacking: A:F.60, A:F.60
MYA.2: 15 residues within 4Å:- Chain B: K.12, Y.52, L.55, R.58, F.60, L.64, R.88, T.94, R.105, V.112, G.113, N.115, I.117, H.118
- Ligands: MG.3
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:K.12, B:Y.52, B:Y.52, B:R.88, B:T.94, B:R.105, B:N.115
- Salt bridges: B:K.12, B:R.58, B:R.88, B:H.118
- pi-Stacking: B:F.60, B:F.60
MYA.4: 16 residues within 4Å:- Chain C: K.12, Y.52, L.55, R.58, F.60, L.64, R.88, T.94, R.105, V.112, G.113, N.115, I.117, H.118, G.119
- Ligands: MG.5
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:K.12, C:Y.52, C:Y.52, C:R.88, C:R.105, C:N.115
- Water bridges: C:R.88, C:H.118, C:G.119
- Salt bridges: C:K.12, C:R.58, C:H.118
- pi-Stacking: C:F.60, C:F.60
- 7 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.3: 7 residues within 4Å:- Chain B: K.12, L.64, Y.67, V.112, G.113, N.115
- Ligands: MYA.2
No protein-ligand interaction detected (PLIP)MG.5: 1 residues within 4Å:- Ligands: MYA.4
No protein-ligand interaction detected (PLIP)MG.7: 5 residues within 4Å:- Chain D: K.12, K.49, T.94, N.115, H.118
No protein-ligand interaction detected (PLIP)MG.8: 5 residues within 4Å:- Chain E: K.12, K.49, T.94, N.115, H.118
No protein-ligand interaction detected (PLIP)MG.9: 5 residues within 4Å:- Chain F: G.92, E.93, S.99, K.100, T.103
No protein-ligand interaction detected (PLIP)MG.10: 4 residues within 4Å:- Chain C: Y.142, K.143
- Chain F: R.42, S.70
No protein-ligand interaction detected (PLIP)MG.11: 5 residues within 4Å:- Chain F: K.12, R.88, T.94, R.105, H.118
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:H.118
- 1 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 9 residues within 4Å:- Chain D: F.8, A.10, K.12, P.13, E.45, L.48, V.73, H.118, W.133
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, S. et al., A Chemical Proteomic Approach reveals the regulation of NME1/2 and cancer metastasis by Long-Chain Fatty Acyl Coenzyme A. To Be Published
- Release Date
- 2022-02-02
- Peptides
- Nucleoside diphosphate kinase B: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.23 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x MYA: TETRADECANOYL-COA(Non-covalent)
- 7 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, S. et al., A Chemical Proteomic Approach reveals the regulation of NME1/2 and cancer metastasis by Long-Chain Fatty Acyl Coenzyme A. To Be Published
- Release Date
- 2022-02-02
- Peptides
- Nucleoside diphosphate kinase B: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F