SMTL ID : 7kpp.1 (1 other biounit)

Structure of the E102A mutant of a GNAT superfamily PA3944 acetyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x COA: COENZYME A(Non-covalent)

COA.1: 22 residues within 4Å: Chain A: V.42, F.46, W.107, R.108, L.109, W.114, G.115, R.116, G.117, L.118, A.119, R.120, F.142, T.143, N.147, R.149, S.150, L.153, R.156 Ligands: UNX.3, UNX.4, EDO.7 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:R.108, A:A.119 Hydrogen bonds: A:W.107, A:L.109, A:G.115, A:G.117, A:G.117, A:A.119, A:R.120, A:N.147 Water bridges: A:R.19, A:V.42, A:R.116, A:L.118, A:R.120, A:R.156, A:R.156, A:R.156 Salt bridges: A:R.156

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: E.138, R.185, V.186, D.187, R.190 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.138, A:D.187, A:R.190 EDO.5: 4 residues within 4Å: Chain A: R.61, A.64, H.65, E.68 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.61, A:R.61, A:A.64 Water bridges: A:E.68, A:T.94 EDO.6: 4 residues within 4Å: Chain A: D.92, V.93, P.101, T.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.93, A:T.102 EDO.7: 6 residues within 4Å: Chain A: F.46, F.87, W.107, R.108 Ligands: COA.1, UNX.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.107, A:R.108 EDO.8: 2 residues within 4Å: Chain A: P.18, R.19 No protein-ligand interaction detected (PLIP)

6 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 7 residues within 4Å: Chain A: I.105, W.107, F.142, S.150, M.154 Ligands: COA.1, UNX.4 No protein-ligand interaction detected (PLIP) UNX.4: 5 residues within 4Å: Chain A: G.106, W.107 Ligands: COA.1, UNX.3, EDO.7 No protein-ligand interaction detected (PLIP) UNX.9: 1 residues within 4Å: Chain A: D.187 No protein-ligand interaction detected (PLIP) UNX.10: 2 residues within 4Å: Ligands: UNX.11, UNX.12 No protein-ligand interaction detected (PLIP) UNX.11: 3 residues within 4Å: Chain A: E.132 Ligands: UNX.10, UNX.12 No protein-ligand interaction detected (PLIP) UNX.12: 2 residues within 4Å: Ligands: UNX.10, UNX.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baumgartner, J.T. et al., Gcn5-Related N- Acetyltransferases (GNATs) With a Catalytic Serine Residue Can Play Ping-Pong Too. Front Mol Biosci (2021)

Release Date

2020-11-25

Peptides

Acetyltransferase PA3944: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acetyltransferase PA3944

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