SMTL ID : 7kq5.3 (4 other biounits)

Cryo-EM structure of a thermostable encapsulin from T. maritima

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

5 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 6 residues within 4Å: Chain A: E.77, L.78, R.79, A.80, T.81, E.235 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:R.79 Hydrogen bonds: A:R.79, A:R.79, A:T.81, A:E.235 Water bridges: A:E.235 pi-Cation interactions: A:R.79 FMN.2: 6 residues within 4Å: Chain B: E.77, L.78, R.79, A.80, T.81, E.235 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:R.79 Hydrogen bonds: B:R.79, B:R.79, B:T.81, B:E.235 Water bridges: B:E.235 pi-Cation interactions: B:R.79 FMN.3: 6 residues within 4Å: Chain C: E.77, L.78, R.79, A.80, T.81, E.235 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:R.79 Hydrogen bonds: C:R.79, C:R.79, C:T.81, C:E.235 Water bridges: C:E.235 pi-Cation interactions: C:R.79 FMN.4: 6 residues within 4Å: Chain D: E.77, L.78, R.79, A.80, T.81, E.235 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:R.79 Hydrogen bonds: D:R.79, D:R.79, D:T.81, D:E.235 Water bridges: D:E.235 pi-Cation interactions: D:R.79 FMN.5: 6 residues within 4Å: Chain E: E.77, L.78, R.79, A.80, T.81, E.235 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:R.79 Hydrogen bonds: E:R.79, E:R.79, E:T.81, E:E.235 Water bridges: E:E.235 pi-Cation interactions: E:R.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wiryaman, T. et al., Cryo-EM structure of a thermostable bacterial nanocompartment. Iucrj (2021)

Release Date

2021-04-28

Peptides

Maritimacin: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

Maritimacin

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