SMTL ID : 7kql.1

Anti-Tim3 antibody Fab complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain A: F.176, P.177, V.179, S.187, L.188, S.189 Chain B: Q.161, S.163, S.177, S.178, T.179 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.163, B:S.177, B:T.179, A:F.176, A:S.187, A:S.189 GOL.2: 6 residues within 4Å: Chain B: Q.38, K.40, G.58, I.59, P.60, F.63 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.38, B:K.40, B:G.58 Water bridges: B:Q.38, B:R.62 GOL.3: 2 residues within 4Å: Chain B: E.214, C.215 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:C.215 GOL.4: 6 residues within 4Å: Chain A: W.109, E.111 Chain B: L.47, Y.50, A.56, T.57 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Water bridges: A:P.102 Hydrogen bonds: B:Y.50, B:T.57, B:T.57, B:T.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pagliano, O. et al., Tim-3 mediates T cell trogocytosis to limit antitumor immunity. J.Clin.Invest. (2022)

Release Date

2022-02-09

Peptides

Tim3.18 Fab heavy chain: A
Tim3.18 Fab light chain: B
Hepatitis A virus cellular receptor 2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
T

Tim3.18 Fab heavy chain

Tim3.18 Fab light chain

Hepatitis A virus cellular receptor 2