SMTL ID : 7ksl.1

Substrate-free human mitochondrial LONP1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 11 residues within 4Å: Chain A: H.71, Y.72, G.106, V.107, G.108, K.109, T.110, S.111, Y.241, Y.253, V.289 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Y.72, A:G.106, A:V.107, A:G.108, A:K.109, A:T.110, A:T.110, A:S.111, A:Y.241, A:Y.241 Salt bridges: A:K.109 pi-Stacking: A:H.71 ADP.2: 18 residues within 4Å: Chain B: H.71, Y.72, M.74, P.104, P.105, G.106, V.107, G.108, K.109, T.110, S.111, Y.241, I.249, Y.253, Q.257, V.289, R.290, Q.293 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:Y.72, B:G.106, B:V.107, B:G.108, B:K.109, B:T.110, B:T.110, B:T.110, B:Y.241, B:Y.241, B:Q.257, B:Q.257, B:Q.293 Salt bridges: B:K.109, B:R.290, B:R.290 pi-Cation interactions: B:H.71 ADP.3: 14 residues within 4Å: Chain C: H.71, Y.72, G.106, V.107, G.108, K.109, T.110, S.111, Y.241, I.249, Y.253, Q.257, V.289, Q.293 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:Y.72, C:G.106, C:V.107, C:G.108, C:K.109, C:T.110, C:T.110, C:T.110, C:Y.241, C:Y.241, C:Q.257, C:Q.293, C:Q.293 Salt bridges: C:K.109 pi-Cation interactions: C:H.71 ADP.4: 15 residues within 4Å: Chain D: H.71, Y.72, P.105, G.106, V.107, G.108, K.109, T.110, S.111, Y.241, I.249, Y.253, Q.257, V.289, Q.293 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:Y.72, D:Y.72, D:G.106, D:V.107, D:G.108, D:K.109, D:T.110, D:T.110, D:Q.257, D:Q.293 Salt bridges: D:K.109 pi-Cation interactions: D:H.71 ADP.5: 13 residues within 4Å: Chain E: H.71, Y.72, G.106, V.107, G.108, K.109, T.110, S.111, Y.241, I.249, Y.253, V.289, R.290 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:Y.72, E:Y.72, E:G.106, E:V.107, E:G.108, E:K.109, E:T.110, E:T.110, E:T.110, E:Y.241 Salt bridges: E:K.109, E:R.290, E:R.290 pi-Cation interactions: E:H.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, M. et al., Structures of the human LONP1 protease reveal regulatory steps involved in protease activation. Nat Commun (2021)

Release Date

2020-12-09

Peptides

Lon protease homolog, mitochondrial: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
B

C
A

D
F

E
E

Lon protease homolog, mitochondrial