- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-18-18-mer
- Ligands
- 36 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 18 x 6OU: [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate(Non-covalent)
6OU.3: 8 residues within 4Å:- Chain A: T.404, T.405, G.408, A.409, R.411, M.412, F.422, G.423
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:T.405, A:A.409
- Salt bridges: A:R.411
6OU.7: 9 residues within 4Å:- Chain B: F.11, V.12, T.404, T.405, G.408, A.409, R.411, M.412, F.422
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.409
- Hydrogen bonds: B:F.11
- Salt bridges: B:R.411
6OU.11: 7 residues within 4Å:- Chain C: T.404, T.405, G.408, A.409, R.411, M.412, G.423
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:T.405, C:A.409
- Water bridges: C:E.13
- Salt bridges: C:R.411
6OU.15: 8 residues within 4Å:- Chain G: T.404, T.405, G.408, A.409, R.411, M.412, F.422, G.423
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:T.405, G:A.409
- Salt bridges: G:R.411
6OU.19: 9 residues within 4Å:- Chain H: F.11, V.12, T.404, T.405, G.408, A.409, R.411, M.412, F.422
3 PLIP interactions:3 interactions with chain H- Hydrophobic interactions: H:A.409
- Hydrogen bonds: H:F.11
- Salt bridges: H:R.411
6OU.23: 7 residues within 4Å:- Chain I: T.404, T.405, G.408, A.409, R.411, M.412, G.423
4 PLIP interactions:4 interactions with chain I- Hydrophobic interactions: I:T.405, I:A.409
- Water bridges: I:E.13
- Salt bridges: I:R.411
6OU.27: 8 residues within 4Å:- Chain M: T.404, T.405, G.408, A.409, R.411, M.412, F.422, G.423
3 PLIP interactions:3 interactions with chain M- Hydrophobic interactions: M:T.405, M:A.409
- Salt bridges: M:R.411
6OU.31: 9 residues within 4Å:- Chain N: F.11, V.12, T.404, T.405, G.408, A.409, R.411, M.412, F.422
3 PLIP interactions:3 interactions with chain N- Hydrophobic interactions: N:A.409
- Hydrogen bonds: N:F.11
- Salt bridges: N:R.411
6OU.35: 7 residues within 4Å:- Chain O: T.404, T.405, G.408, A.409, R.411, M.412, G.423
4 PLIP interactions:4 interactions with chain O- Hydrophobic interactions: O:T.405, O:A.409
- Water bridges: O:E.13
- Salt bridges: O:R.411
6OU.39: 8 residues within 4Å:- Chain S: T.404, T.405, G.408, A.409, R.411, M.412, F.422, G.423
3 PLIP interactions:3 interactions with chain S- Hydrophobic interactions: S:T.405, S:A.409
- Salt bridges: S:R.411
6OU.43: 9 residues within 4Å:- Chain T: F.11, V.12, T.404, T.405, G.408, A.409, R.411, M.412, F.422
3 PLIP interactions:3 interactions with chain T- Hydrophobic interactions: T:A.409
- Hydrogen bonds: T:F.11
- Salt bridges: T:R.411
6OU.47: 7 residues within 4Å:- Chain U: T.404, T.405, G.408, A.409, R.411, M.412, G.423
4 PLIP interactions:4 interactions with chain U- Hydrophobic interactions: U:T.405, U:A.409
- Water bridges: U:E.13
- Salt bridges: U:R.411
6OU.51: 8 residues within 4Å:- Chain Y: T.404, T.405, G.408, A.409, R.411, M.412, F.422, G.423
3 PLIP interactions:3 interactions with chain Y- Hydrophobic interactions: Y:T.405, Y:A.409
- Salt bridges: Y:R.411
6OU.55: 9 residues within 4Å:- Chain Z: F.11, V.12, T.404, T.405, G.408, A.409, R.411, M.412, F.422
3 PLIP interactions:3 interactions with chain Z- Hydrophobic interactions: Z:A.409
- Hydrogen bonds: Z:F.11
- Salt bridges: Z:R.411
6OU.59: 7 residues within 4Å:- Chain 0: T.404, T.405, G.408, A.409, R.411, M.412, G.423
4 PLIP interactions:4 interactions with chain 0- Hydrophobic interactions: 0:T.405, 0:A.409
- Water bridges: 0:E.13
- Salt bridges: 0:R.411
6OU.63: 8 residues within 4Å:- Chain 4: T.404, T.405, G.408, A.409, R.411, M.412, F.422, G.423
3 PLIP interactions:3 interactions with chain 4- Hydrophobic interactions: 4:T.405, 4:A.409
- Salt bridges: 4:R.411
6OU.67: 9 residues within 4Å:- Chain 5: F.11, V.12, T.404, T.405, G.408, A.409, R.411, M.412, F.422
3 PLIP interactions:3 interactions with chain 5- Hydrophobic interactions: 5:A.409
- Hydrogen bonds: 5:F.11
- Salt bridges: 5:R.411
6OU.71: 7 residues within 4Å:- Chain 6: T.404, T.405, G.408, A.409, R.411, M.412, G.423
4 PLIP interactions:4 interactions with chain 6- Hydrophobic interactions: 6:T.405, 6:A.409
- Water bridges: 6:E.13
- Salt bridges: 6:R.411
- 18 x 1Q0: (2S,3R,4Z)-3-hydroxy-2-[(9E)-octadec-9-enoylamino]octadec-4-en-1-yl dihydrogen phosphate(Non-covalent)
1Q0.4: 13 residues within 4Å:- Chain A: A.409, M.412, A.413, I.414, L.415, G.416, W.420, G.433, H.437, G.441, Y.444, Y.488, L.489
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:A.409, A:M.412, A:W.420, A:W.420, A:H.437, A:Y.444, A:Y.488, A:Y.488, A:L.489
- Hydrogen bonds: A:A.413
1Q0.8: 15 residues within 4Å:- Chain B: A.409, M.412, A.413, I.414, L.415, G.416, W.420, G.433, H.437, F.440, G.441, Y.444, V.484, Y.488, L.489
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:A.409, B:W.420, B:H.437, B:Y.444, B:Y.444, B:Y.488, B:Y.488, B:Y.488, B:L.489
- Hydrogen bonds: B:A.413
1Q0.12: 15 residues within 4Å:- Chain C: A.409, M.412, A.413, I.414, G.416, W.420, G.433, L.436, H.437, G.441, Y.444, V.484, V.485, Y.488, L.489
13 PLIP interactions:13 interactions with chain C- Hydrophobic interactions: C:M.412, C:W.420, C:W.420, C:L.436, C:H.437, C:Y.444, C:Y.444, C:V.484, C:V.485, C:Y.488, C:Y.488, C:L.489
- Hydrogen bonds: C:A.413
1Q0.16: 13 residues within 4Å:- Chain G: A.409, M.412, A.413, I.414, L.415, G.416, W.420, G.433, H.437, G.441, Y.444, Y.488, L.489
10 PLIP interactions:10 interactions with chain G- Hydrophobic interactions: G:A.409, G:M.412, G:W.420, G:W.420, G:H.437, G:Y.444, G:Y.488, G:Y.488, G:L.489
- Hydrogen bonds: G:A.413
1Q0.20: 15 residues within 4Å:- Chain H: A.409, M.412, A.413, I.414, L.415, G.416, W.420, G.433, H.437, F.440, G.441, Y.444, V.484, Y.488, L.489
10 PLIP interactions:10 interactions with chain H- Hydrophobic interactions: H:A.409, H:W.420, H:H.437, H:Y.444, H:Y.444, H:Y.488, H:Y.488, H:Y.488, H:L.489
- Hydrogen bonds: H:A.413
1Q0.24: 15 residues within 4Å:- Chain I: A.409, M.412, A.413, I.414, G.416, W.420, G.433, L.436, H.437, G.441, Y.444, V.484, V.485, Y.488, L.489
13 PLIP interactions:13 interactions with chain I- Hydrophobic interactions: I:M.412, I:W.420, I:W.420, I:L.436, I:H.437, I:Y.444, I:Y.444, I:V.484, I:V.485, I:Y.488, I:Y.488, I:L.489
- Hydrogen bonds: I:A.413
1Q0.28: 13 residues within 4Å:- Chain M: A.409, M.412, A.413, I.414, L.415, G.416, W.420, G.433, H.437, G.441, Y.444, Y.488, L.489
10 PLIP interactions:10 interactions with chain M- Hydrophobic interactions: M:A.409, M:M.412, M:W.420, M:W.420, M:H.437, M:Y.444, M:Y.488, M:Y.488, M:L.489
- Hydrogen bonds: M:A.413
1Q0.32: 15 residues within 4Å:- Chain N: A.409, M.412, A.413, I.414, L.415, G.416, W.420, G.433, H.437, F.440, G.441, Y.444, V.484, Y.488, L.489
10 PLIP interactions:10 interactions with chain N- Hydrophobic interactions: N:A.409, N:W.420, N:H.437, N:Y.444, N:Y.444, N:Y.488, N:Y.488, N:Y.488, N:L.489
- Hydrogen bonds: N:A.413
1Q0.36: 15 residues within 4Å:- Chain O: A.409, M.412, A.413, I.414, G.416, W.420, G.433, L.436, H.437, G.441, Y.444, V.484, V.485, Y.488, L.489
13 PLIP interactions:13 interactions with chain O- Hydrophobic interactions: O:M.412, O:W.420, O:W.420, O:L.436, O:H.437, O:Y.444, O:Y.444, O:V.484, O:V.485, O:Y.488, O:Y.488, O:L.489
- Hydrogen bonds: O:A.413
1Q0.40: 13 residues within 4Å:- Chain S: A.409, M.412, A.413, I.414, L.415, G.416, W.420, G.433, H.437, G.441, Y.444, Y.488, L.489
10 PLIP interactions:10 interactions with chain S- Hydrophobic interactions: S:A.409, S:M.412, S:W.420, S:W.420, S:H.437, S:Y.444, S:Y.488, S:Y.488, S:L.489
- Hydrogen bonds: S:A.413
1Q0.44: 15 residues within 4Å:- Chain T: A.409, M.412, A.413, I.414, L.415, G.416, W.420, G.433, H.437, F.440, G.441, Y.444, V.484, Y.488, L.489
10 PLIP interactions:10 interactions with chain T- Hydrophobic interactions: T:A.409, T:W.420, T:H.437, T:Y.444, T:Y.444, T:Y.488, T:Y.488, T:Y.488, T:L.489
- Hydrogen bonds: T:A.413
1Q0.48: 15 residues within 4Å:- Chain U: A.409, M.412, A.413, I.414, G.416, W.420, G.433, L.436, H.437, G.441, Y.444, V.484, V.485, Y.488, L.489
13 PLIP interactions:13 interactions with chain U- Hydrophobic interactions: U:M.412, U:W.420, U:W.420, U:L.436, U:H.437, U:Y.444, U:Y.444, U:V.484, U:V.485, U:Y.488, U:Y.488, U:L.489
- Hydrogen bonds: U:A.413
1Q0.52: 13 residues within 4Å:- Chain Y: A.409, M.412, A.413, I.414, L.415, G.416, W.420, G.433, H.437, G.441, Y.444, Y.488, L.489
10 PLIP interactions:10 interactions with chain Y- Hydrophobic interactions: Y:A.409, Y:M.412, Y:W.420, Y:W.420, Y:H.437, Y:Y.444, Y:Y.488, Y:Y.488, Y:L.489
- Hydrogen bonds: Y:A.413
1Q0.56: 15 residues within 4Å:- Chain Z: A.409, M.412, A.413, I.414, L.415, G.416, W.420, G.433, H.437, F.440, G.441, Y.444, V.484, Y.488, L.489
10 PLIP interactions:10 interactions with chain Z- Hydrophobic interactions: Z:A.409, Z:W.420, Z:H.437, Z:Y.444, Z:Y.444, Z:Y.488, Z:Y.488, Z:Y.488, Z:L.489
- Hydrogen bonds: Z:A.413
1Q0.60: 15 residues within 4Å:- Chain 0: A.409, M.412, A.413, I.414, G.416, W.420, G.433, L.436, H.437, G.441, Y.444, V.484, V.485, Y.488, L.489
13 PLIP interactions:13 interactions with chain 0- Hydrophobic interactions: 0:M.412, 0:W.420, 0:W.420, 0:L.436, 0:H.437, 0:Y.444, 0:Y.444, 0:V.484, 0:V.485, 0:Y.488, 0:Y.488, 0:L.489
- Hydrogen bonds: 0:A.413
1Q0.64: 13 residues within 4Å:- Chain 4: A.409, M.412, A.413, I.414, L.415, G.416, W.420, G.433, H.437, G.441, Y.444, Y.488, L.489
10 PLIP interactions:10 interactions with chain 4- Hydrophobic interactions: 4:A.409, 4:M.412, 4:W.420, 4:W.420, 4:H.437, 4:Y.444, 4:Y.488, 4:Y.488, 4:L.489
- Hydrogen bonds: 4:A.413
1Q0.68: 15 residues within 4Å:- Chain 5: A.409, M.412, A.413, I.414, L.415, G.416, W.420, G.433, H.437, F.440, G.441, Y.444, V.484, Y.488, L.489
10 PLIP interactions:10 interactions with chain 5- Hydrophobic interactions: 5:A.409, 5:W.420, 5:H.437, 5:Y.444, 5:Y.444, 5:Y.488, 5:Y.488, 5:Y.488, 5:L.489
- Hydrogen bonds: 5:A.413
1Q0.72: 15 residues within 4Å:- Chain 6: A.409, M.412, A.413, I.414, G.416, W.420, G.433, L.436, H.437, G.441, Y.444, V.484, V.485, Y.488, L.489
13 PLIP interactions:13 interactions with chain 6- Hydrophobic interactions: 6:M.412, 6:W.420, 6:W.420, 6:L.436, 6:H.437, 6:Y.444, 6:Y.444, 6:V.484, 6:V.485, 6:Y.488, 6:Y.488, 6:L.489
- Hydrogen bonds: 6:A.413
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hardy, J.M. et al., A unified route for flavivirus structures uncovers essential pocket factors conserved across pathogenic viruses. Nat Commun (2021)
- Release Date
- 2020-12-23
- Peptides
- Envelope protein E: ABCGHIMNOSTUYZ0456
Matrix protein M: DEFJKLPQRVWX123789 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CG
AH
BI
CM
AN
BO
CS
AT
BU
CY
AZ
B0
C4
A5
B6
CD
aE
bF
cJ
aK
bL
cP
aQ
bR
cV
aW
bX
c1
a2
b3
c7
a8
b9
c
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-18-18-mer
- Ligands
- 36 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 18 x 6OU: [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate(Non-covalent)
- 18 x 1Q0: (2S,3R,4Z)-3-hydroxy-2-[(9E)-octadec-9-enoylamino]octadec-4-en-1-yl dihydrogen phosphate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hardy, J.M. et al., A unified route for flavivirus structures uncovers essential pocket factors conserved across pathogenic viruses. Nat Commun (2021)
- Release Date
- 2020-12-23
- Peptides
- Envelope protein E: ABCGHIMNOSTUYZ0456
Matrix protein M: DEFJKLPQRVWX123789 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CG
AH
BI
CM
AN
BO
CS
AT
BU
CY
AZ
B0
C4
A5
B6
CD
aE
bF
cJ
aK
bL
cP
aQ
bR
cV
aW
bX
c1
a2
b3
c7
a8
b9
c