SMTL ID : 7kva.2 (3 other biounits)

Structure of West Nile virus (Kunjin)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-15-15-mer

Ligands

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.154, T.157 Ligand excluded by PLIP NAG.2: 2 residues within 4Å: Chain B: N.154, T.157 Ligand excluded by PLIP NAG.3: 1 residues within 4Å: Chain C: N.154 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain G: N.154, T.157 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain H: N.154, T.157 Ligand excluded by PLIP NAG.6: 1 residues within 4Å: Chain I: N.154 Ligand excluded by PLIP NAG.7: 2 residues within 4Å: Chain M: N.154, T.157 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain N: N.154, T.157 Ligand excluded by PLIP NAG.9: 1 residues within 4Å: Chain O: N.154 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain S: N.154, T.157 Ligand excluded by PLIP NAG.11: 2 residues within 4Å: Chain T: N.154, T.157 Ligand excluded by PLIP NAG.12: 1 residues within 4Å: Chain U: N.154 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain Y: N.154, T.157 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain Z: N.154, T.157 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain 0: N.154 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hardy, J.M. et al., A unified route for flavivirus structures uncovers essential pocket factors conserved across pathogenic viruses. Nat Commun (2021)

Release Date

2020-12-23

Peptides

Envelope protein E: ABCGHIMNOSTUYZ0
Matrix protein M: DEFJKLPQRVWX123

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

G
A

H
B

I
C

M
A

N
B

O
C

S
A

T
B

U
C

Y
A

Z
B

0
C

D
a

E
b

F
c

J
a

K
b

L
c

P
a

Q
b

R
c

V
a

W
b

X
c

1
a

2
b

3
c

Envelope protein E

Matrix protein M

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