SMTL ID : 7kwm.1

CtBP1 (28-375) L182F/V185T - AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 17 residues within 4Å: Chain A: I.174, G.175, F.176, G.177, R.178, T.179, Y.197, D.198, P.199, Y.200, L.201, H.230, C.231, G.232, N.234, N.237, L.240 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.177, A:R.178, A:T.179, A:N.234, A:N.237 Water bridges: A:R.178, A:R.178, A:Y.200, A:G.232, A:G.232, A:H.236 Salt bridges: A:R.178 pi-Stacking: A:Y.200 AMP.3: 17 residues within 4Å: Chain B: I.174, G.175, F.176, G.177, R.178, T.179, Y.197, D.198, P.199, Y.200, L.201, H.230, C.231, G.232, N.234, N.237, L.240 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.177, B:R.178, B:T.179, B:N.234, B:N.237 Water bridges: B:R.178, B:R.178, B:Y.200, B:G.232, B:G.232, B:H.236 Salt bridges: B:R.178 pi-Stacking: B:Y.200 AMP.5: 17 residues within 4Å: Chain C: I.174, G.175, F.176, G.177, R.178, T.179, Y.197, D.198, P.199, Y.200, L.201, H.230, C.231, G.232, N.234, N.237, L.240 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:G.177, C:R.178, C:T.179, C:N.234, C:N.237 Water bridges: C:R.178, C:R.178, C:Y.200, C:G.232, C:G.232, C:H.236 Salt bridges: C:R.178 pi-Stacking: C:Y.200 AMP.7: 17 residues within 4Å: Chain D: I.174, G.175, F.176, G.177, R.178, T.179, Y.197, D.198, P.199, Y.200, L.201, H.230, C.231, G.232, N.234, N.237, L.240 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:G.177, D:R.178, D:T.179, D:N.234, D:N.237 Water bridges: D:R.178, D:R.178, D:Y.200, D:G.232, D:G.232, D:H.236 Salt bridges: D:R.178 pi-Stacking: D:Y.200

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 1 residues within 4Å: Chain A: R.279 No protein-ligand interaction detected (PLIP) CA.4: 1 residues within 4Å: Chain B: R.279 No protein-ligand interaction detected (PLIP) CA.6: 1 residues within 4Å: Chain C: R.279 No protein-ligand interaction detected (PLIP) CA.8: 1 residues within 4Å: Chain D: R.279 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nichols, J.C. et al., NAD(H) phosphates mediate tetramer assembly of human C-terminal binding protein (CtBP). J.Biol.Chem. (2021)

Release Date

2021-02-03

Peptides

C-terminal-binding protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

C-terminal-binding protein 1