SMTL ID : 7kwo.1

rFVIIIFc-VWF-XTEN (BIVV001)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: V.1278, A.1342, Q.1345, N.1525, N.1548 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.1342 Hydrogen bonds: A:N.1548

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: M.36, M.250, V.257, N.258, H.336 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.257 NAG.3: 1 residues within 4Å: Chain A: N.1217 No protein-ligand interaction detected (PLIP) NAG.7: 1 residues within 4Å: Chain B: N.857 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: K.126, E.141, D.144, D.145 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:K.126, A:E.141, A:D.144, A:D.144, A:D.145 CA.8: 6 residues within 4Å: Chain B: D.879, N.998, D.1000, I.1002, N.1005, D.1006 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.879, B:D.1000, B:I.1002, B:D.1006

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: H.286, C.329, H.334, M.339 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.286, A:C.329, A:H.334

1 x CU: COPPER (II) ION(Non-covalent)

CU.6: 6 residues within 4Å: Chain A: I.1360, H.1361, C.1407, I.1409, H.1412, M.1417 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.1361, A:C.1407, A:H.1412

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fuller, J.R. et al., Molecular determinants of the factor VIII/von Willebrand factor complex revealed by BIVV001 cryo-electron microscopy. Blood (2021)

Release Date

2021-03-03

Peptides

Coagulation factor FVIII-Fc-XTEN: A
von Willebrand factor-XTEN-Fc: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
V

Coagulation factor FVIII-Fc-XTEN

von Willebrand factor-XTEN-Fc