SMTL ID : 7kxo.1

BTK1 SOAKED WITH COMPOUND 24

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x X9S: 3-tert-butyl-N-[(1R)-6-{2-[5-methyl-1-(oxan-4-yl)-1H-pyrazol-4-yl]-3H-imidazo[4,5-b]pyridin-7-yl}-1,2,3,4-tetrahydronaphthalen-1-yl]-1,2,4-oxadiazole-5-carboxamide(Non-covalent)

X9S.1: 22 residues within 4Å: Chain A: L.16, G.17, T.18, G.19, Q.20, F.21, V.24, A.36, K.38, T.82, E.83, Y.84, M.85, A.86, G.88, D.129, N.134, L.136, D.147, L.150, S.151, Y.159 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.16, A:Q.20, A:V.24, A:V.24, A:A.36, A:L.136, A:L.150, A:Y.159 Hydrogen bonds: A:M.85, A:M.85 Water bridges: A:Q.20, A:Q.20, A:R.133, A:N.134, A:N.134

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: Y.235, T.236, Y.239 No protein-ligand interaction detected (PLIP) DMS.3: 7 residues within 4Å: Chain A: R.128, W.171, S.172, V.176, F.182, D.187, A.190 No protein-ligand interaction detected (PLIP) DMS.4: 2 residues within 4Å: Chain A: Q.102, Q.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.102, A:Q.104 DMS.5: 4 residues within 4Å: Chain A: Y.206, E.207, R.208, F.209 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.208 Water bridges: A:Y.206, A:E.207 pi-Cation interactions: A:F.209 DMS.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, H. et al., Discovery of potent and selective reversible Bruton's tyrosine kinase inhibitors. Bioorg.Med.Chem. (2021)

Release Date

2021-05-19

Peptides

Isoform BTK-C of Tyrosine-protein kinase BTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform BTK-C of Tyrosine-protein kinase BTK

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