SMTL ID : 7kxr.1

Protective antigen pore translocating lethal factor N-terminal domain

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-7-mer

Ligands

14 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain B: D.6, D.8, I.10, P.11, D.12 Ligands: CA.2 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.6, B:D.6, B:D.8, B:I.10 CA.2: 7 residues within 4Å: Chain B: D.6, D.8, S.49, K.52, T.55, D.62 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.6, B:D.8, B:S.49, B:K.52, B:D.62 CA.3: 6 residues within 4Å: Chain C: D.6, D.8, I.10, P.11, D.12 Ligands: CA.4 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.6, C:D.6, C:D.8, C:I.10 CA.4: 7 residues within 4Å: Chain C: D.6, D.8, S.49, K.52, T.55, D.62 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.6, C:D.8, C:S.49, C:K.52, C:D.62 CA.5: 6 residues within 4Å: Chain D: D.6, D.8, I.10, P.11, D.12 Ligands: CA.6 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.6, D:D.6, D:D.8, D:I.10 CA.6: 7 residues within 4Å: Chain D: D.6, D.8, S.49, K.52, T.55, D.62 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.6, D:D.8, D:S.49, D:K.52, D:D.62 CA.7: 6 residues within 4Å: Chain E: D.6, D.8, I.10, P.11, D.12 Ligands: CA.8 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.6, E:D.6, E:D.8, E:I.10 CA.8: 7 residues within 4Å: Chain E: D.6, D.8, S.49, K.52, T.55, D.62 Ligands: CA.7 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.6, E:D.8, E:S.49, E:K.52, E:D.62 CA.9: 6 residues within 4Å: Chain F: D.6, D.8, I.10, P.11, D.12 Ligands: CA.10 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:D.6, F:D.6, F:D.8, F:I.10 CA.10: 7 residues within 4Å: Chain F: D.6, D.8, S.49, K.52, T.55, D.62 Ligands: CA.9 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.6, F:D.8, F:S.49, F:K.52, F:D.62 CA.11: 6 residues within 4Å: Chain G: D.6, D.8, I.10, P.11, D.12 Ligands: CA.12 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.6, G:D.6, G:D.8, G:I.10 CA.12: 7 residues within 4Å: Chain G: D.6, D.8, S.49, K.52, T.55, D.62 Ligands: CA.11 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:D.6, G:D.8, G:S.49, G:K.52, G:D.62 CA.13: 6 residues within 4Å: Chain H: D.6, D.8, I.10, P.11, D.12 Ligands: CA.14 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:D.6, H:D.6, H:D.8, H:I.10 CA.14: 7 residues within 4Å: Chain H: D.6, D.8, S.49, K.52, T.55, D.62 Ligands: CA.13 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:D.6, H:D.8, H:S.49, H:K.52, H:D.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Machen, A.J. et al., Anthrax toxin translocation complex reveals insight into the lethal factor unfolding and refolding mechanism. Sci Rep (2021)

Release Date

2021-07-14

Peptides

Lethal factor: A
Protective antigen: BCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
A

C
B

D
C

E
D

F
E

G
F

H
G

Membrane

We predict this structure to be a membrane protein.
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Lethal factor

Protective antigen

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