SMTL ID : 7kxw.2 (1 other biounit)

Crystal structure of DCLK1-KD in complex with DCLK1-IN-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x XBD: 2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-11-methyl-5-(2,2,2-trifluoroethyl)-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one(Non-covalent)

XBD.1: 17 residues within 4Å: Chain A: V.35, E.37, A.48, K.50, V.80, M.96, E.97, L.98, V.99, G.102, D.106, E.146, N.147, L.149, G.163, D.164 Ligands: PG4.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.149 Hydrogen bonds: A:V.99, A:V.99 Salt bridges: A:D.106

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 5 residues within 4Å: Chain A: K.50, I.52, E.67, L.94 Ligands: XBD.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, O. et al., Structural basis for small molecule targeting of Doublecortin Like Kinase 1 with DCLK1-IN-1. Commun Biol (2021)

Release Date

2021-09-22

Peptides

Serine/threonine-protein kinase DCLK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Serine/threonine-protein kinase DCLK1

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