SMTL ID : 7kzs.1

Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in open state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.20 Å

Oligo State

hetero-2-2-1-1-1-2-2-2-1-1-1-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain F: C.411, E.414, C.518, G.521, C.522 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.411, F:E.414, F:C.518, F:C.522 ZN.2: 5 residues within 4Å: Chain H: C.326, C.329, L.334, H.353, C.356 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.326, H:C.329, H:H.353, H:C.356 ZN.3: 5 residues within 4Å: Chain H: C.343, C.348, C.378, Y.380, C.381 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.343, H:C.348, H:C.378, H:C.381 ZN.4: 6 residues within 4Å: Chain N: C.326, I.328, C.329, L.334, H.353, C.356 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.326, N:C.329, N:H.353, N:C.356 ZN.5: 5 residues within 4Å: Chain N: C.343, C.348, C.378, Y.380, C.381 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.343, N:C.348, N:C.378, N:C.381

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-03-10

Peptides

Fanconi anemia group A protein: AL
Fanconi anemia group B protein: BI
Fanconi anemia group C protein: C
Fanconi anemia group E protein: D
Fanconi anemia group F protein: E
Fanconi anemia group G protein: FG
E3 ubiquitin-protein ligase FANCL: HN
Fanconi anemia core complex-associated protein 100: JK
Fanconi anemia core complex-associated protein 20: M
Ubiquitin-conjugating enzyme E2 T: O
Fanconi anemia, complementation group I: P
Fanconi anemia group D2 protein: Q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L
S

B
B

I
O

C
C

D
E

E
F

F
G

G
H

H
L

N
M

J
P

K
Q

M
W

O
X

P
U

Q
V

Fanconi anemia group A protein

Fanconi anemia group B protein

Fanconi anemia group C protein

Fanconi anemia group E protein

Fanconi anemia group F protein

Fanconi anemia group G protein

E3 ubiquitin-protein ligase FANCL

Fanconi anemia core complex-associated protein 100

Fanconi anemia core complex-associated protein 20

Ubiquitin-conjugating enzyme E2 T

Fanconi anemia, complementation group I

Fanconi anemia group D2 protein

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