SMTL ID : 7l0l.1

Cryo-EM structure of the VRC316 clinical trial, vaccine-elicited, human antibody 316-310-1B11 in complex with an H2 CAN05 HA trimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain B: R.37, N.38 Ligand excluded by PLIP NAG.2: 3 residues within 4Å: Chain B: N.179, W.250, T.252 Ligand excluded by PLIP NAG.3: 2 residues within 4Å: Chain B: N.26 Chain C: Q.15 Ligand excluded by PLIP NAG.4: 1 residues within 4Å: Chain B: N.300 Ligand excluded by PLIP NAG.5: 5 residues within 4Å: Chain C: E.147, N.150, S.151, N.154, T.156 Ligand excluded by PLIP NAG.6: 2 residues within 4Å: Chain F: R.37, N.38 Ligand excluded by PLIP NAG.7: 4 residues within 4Å: Chain F: N.179, T.181, W.250, T.252 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain F: N.26 Chain G: Q.15 Ligand excluded by PLIP NAG.9: 1 residues within 4Å: Chain F: N.300 Ligand excluded by PLIP NAG.10: 5 residues within 4Å: Chain G: E.147, N.150, S.151, N.154, T.156 Ligand excluded by PLIP NAG.11: 2 residues within 4Å: Chain J: R.37, N.38 Ligand excluded by PLIP NAG.12: 4 residues within 4Å: Chain J: N.179, T.181, W.250, T.252 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain J: N.26 Chain K: Q.15 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain J: N.300 Ligand excluded by PLIP NAG.15: 4 residues within 4Å: Chain K: E.147, N.150, N.154, T.156 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andrews, S.F. et al., A single residue in influenza virus H2 hemagglutinin enhances the breadth of the B cell response elicited by H2 vaccination. Nat Med (2022)

Release Date

2021-11-03

Peptides

316-310-1B11 Light Chain: AEI
Hemagglutinin HA1 chain: BFJ
Hemagglutinin HA2 chain: CGK
316-310-1B11 Heavy Chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

E
J

I
K

B
A

F
C

J
D

C
B

G
E

K
F

D
H

H
G

L
I

316-310-1B11 Light Chain

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

316-310-1B11 Heavy Chain