- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.65 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 23 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.8: 2 residues within 4Å:- Chain A: E.132
- Ligands: NAG.3
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.132
CA.9: 2 residues within 4Å:- Chain A: N.137, D.138
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:N.137
CA.10: 1 residues within 4Å:- Chain A: E.169
No protein-ligand interaction detected (PLIP)CA.11: 3 residues within 4Å:- Chain A: N.122, E.156
- Ligands: NAG-NAG.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.156
CA.12: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.13: 3 residues within 4Å:- Chain A: T.33, R.34, S.221
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:R.34
CA.16: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.17: 1 residues within 4Å:- Chain B: Q.179
No protein-ligand interaction detected (PLIP)CA.18: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.19: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.20: 3 residues within 4Å:- Chain B: A.133, S.138
- Chain C: F.121
No protein-ligand interaction detected (PLIP)CA.21: 2 residues within 4Å:- Chain B: G.8, E.10
No protein-ligand interaction detected (PLIP)CA.22: 2 residues within 4Å:- Chain B: T.58, E.72
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:T.58, B:E.72
CA.23: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.24: 1 residues within 4Å:- Chain B: S.17
No protein-ligand interaction detected (PLIP)CA.25: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.26: 1 residues within 4Å:- Chain C: Y.34
No protein-ligand interaction detected (PLIP)CA.28: 2 residues within 4Å:- Chain C: D.87, G.103
No protein-ligand interaction detected (PLIP)CA.29: 1 residues within 4Å:- Chain C: A.115
No protein-ligand interaction detected (PLIP)CA.30: 2 residues within 4Å:- Chain C: Q.39, E.83
No protein-ligand interaction detected (PLIP)CA.31: 3 residues within 4Å:- Chain C: S.117, T.119, S.140
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:T.119
CA.32: 2 residues within 4Å:- Chain C: V.209, A.210
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:A.210
CA.33: 4 residues within 4Å:- Chain C: Q.111, Y.143, K.169, N.173
No protein-ligand interaction detected (PLIP)- 3 x ACT: ACETATE ION(Non-functional Binders)
ACT.14: 4 residues within 4Å:- Chain A: N.196, D.198, G.199, I.233
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.196, A:G.199
ACT.15: 6 residues within 4Å:- Chain A: R.246, L.249, S.256
- Chain B: Q.1, G.26, Y.27
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Salt bridges: A:R.246
- Hydrogen bonds: B:Q.1, B:Y.27
ACT.34: 3 residues within 4Å:- Chain C: G.30, K.68, G.70
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.70
- Salt bridges: C:K.68
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cerutti, G. et al., Potent SARS-CoV-2 neutralizing antibodies directed against spike N-terminal domain target a single supersite. Cell Host Microbe (2021)
- Release Date
- 2021-02-10
- Peptides
- Spike glycoprotein: A
2-51 heavy chain: B
2-51 light chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.65 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 23 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 3 x ACT: ACETATE ION(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cerutti, G. et al., Potent SARS-CoV-2 neutralizing antibodies directed against spike N-terminal domain target a single supersite. Cell Host Microbe (2021)
- Release Date
- 2021-02-10
- Peptides
- Spike glycoprotein: A
2-51 heavy chain: B
2-51 light chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
D