SMTL ID : 7l4k.1

Crystal structure of the DRM2-CCG DNA complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: N.211, S.212, F.213, F.239, T.240, G.241, I.242, G.244, E.263, I.264, N.268, S.289, D.290, I.291, Q.292, G.315, P.317, L.339 Chain C: C.10 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.211, A:F.213, A:I.242, A:G.244, A:I.264, A:N.268, A:D.290, A:I.291, A:Q.292 Water bridges: A:T.240, A:G.245 pi-Stacking: A:F.239

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: I.102, H.103, S.109, K.110, W.113, R.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.119 Water bridges: A:I.102, A:H.103 GOL.3: 5 residues within 4Å: Chain A: F.92, K.226, R.251, L.252, Q.253 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.93, A:K.226, A:Q.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fang, J. et al., Substrate deformation regulates DRM2-mediated DNA methylation in plants. Sci Adv (2021)

Release Date

2021-08-04

Peptides

DNA (cytosine-5)-methyltransferase DRM2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA (cytosine-5)-methyltransferase DRM2

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