SMTL ID : 7l4t.2 (1 other biounit)

Crystal structure of human monoacylglycerol lipase in complex with compound 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 5 residues within 4Å: Chain A: L.222, L.230, L.258 Ligands: MPD.2, MPD.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.222, A:L.230, A:L.258 MPD.2: 8 residues within 4Å: Chain A: A.168, N.169, S.172, L.222, G.227, L.230, L.231 Ligands: MPD.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.230 Hydrogen bonds: A:N.169, A:S.172 MPD.3: 10 residues within 4Å: Chain A: G.67, A.68, E.70, H.138, I.196, L.201, Y.211, H.286, V.287 Ligands: MPD.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.70, A:I.196, A:L.201, A:Y.211 Water bridges: A:A.68, A:E.70, A:S.139 MPD.4: 4 residues within 4Å: Chain A: H.71, G.73, D.214, P.215 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.214, A:D.214

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 1 residues within 4Å: Chain A: Y.128 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ikeda, S. et al., Design and Synthesis of Novel Spiro Derivatives as Potent and Reversible Monoacylglycerol Lipase (MAGL) Inhibitors: Bioisosteric Transformation from 3-Oxo-3,4-dihydro-2 H -benzo[ b ][1,4]oxazin-6-yl Moiety. J.Med.Chem. (2021)

Release Date

2021-08-11

Peptides

Monoglyceride lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Monoglyceride lipase

Related Entries With Identical Sequence