SMTL ID : 7l57.1

Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-15

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-1-1-mer
Ligands
7 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA- MAN- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
31 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Rapp, M. et al., Modular basis for potent SARS-CoV-2 neutralization by a prevalent VH1-2-derived antibody class. Cell Rep (2021)
Release Date
2021-04-14
Peptides
Spike glycoprotein: ABC
Fab 2-15 variable domain heavy chain: D
Fab 2-15 variable domain light chain: E
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
H
E
L

Spike glycoprotein

Fab 2-15 variable domain heavy chain

Fab 2-15 variable domain light chain

Related Entries With Identical Sequence

6vsb.1 | 6xey.1 | 6zow.1 | 6zp5.1 | 6zp7.1 | 6zxn.1 | 7a29.1 | 7b18.1 | 7kkk.1 | 7kkl.1 | 7kms.1 | 7kmz.1 | 7knb.1 | 7kne.1 | 7knh.1 | 7kni.1 | 7ks9.1 | 7ksg.1 | 7l2d.1 | 7l2e.1 | 7l2f.1 | 7l56.1 | 7l58.1 | 7ljr.1 | 7ls9.1 | 7lss.1 | 7mw2.1 | 7mw3.1 | 7mw4.1 | 7mw5.1  more...