SMTL ID : 7l5f.1

Crystal Structure of N-(2-oxocyclobutyl) decanamide Bound AiiA-Co

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: R.89, F.246 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.89

2 x CO: COBALT (II) ION(Non-covalent)

CO.2: 6 residues within 4Å: Chain A: D.108, H.109, D.191, H.235 Ligands: CO.3, XNG.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.108, A:H.109, A:D.191, A:H.235 CO.3: 6 residues within 4Å: Chain A: H.104, H.106, H.169, D.191 Ligands: CO.2, XNG.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.104, A:H.106, A:H.169, A:D.191

1 x XNG: 4-(decanoylamino)butanoic acid(Non-covalent)

XNG.4: 18 residues within 4Å: Chain A: L.16, F.64, F.68, I.73, H.104, H.106, F.107, D.108, H.109, E.135, E.136, M.138, H.169, D.191, Y.194, H.235 Ligands: CO.2, CO.3 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.16, A:F.64, A:F.64, A:F.64, A:F.68, A:I.73, A:E.136 Hydrogen bonds: A:F.107, A:Y.194 Water bridges: A:Y.194 Salt bridges: A:H.104, A:H.106, A:H.109, A:H.169, A:H.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reidl, C.T. et al., Cyclobutanone Inhibitor of Cobalt-Functionalized Metallo-gamma-Lactonase AiiA with Cyclobutanone Ring Opening in the Active Site. Acs Omega (2021)

Release Date

2021-07-28

Peptides

N-acyl homoserine lactonase AiiA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-acyl homoserine lactonase AiiA

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