SMTL ID : 7l5i.1

Crystal Structure of Haemophilus influenzae MtsZ at pH 7.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

3 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 9 residues within 4Å: Chain A: Y.142, W.144, D.173, S.175, Y.193, W.224, Y.388 Ligands: MO.5, O.8 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.173 Salt bridges: A:D.173 EPE.2: 8 residues within 4Å: Chain A: E.194, Q.195, T.395, A.605, A.606, W.609, R.611 Ligands: EPE.7 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.195 Water bridges: A:T.395, A:T.395, A:T.395, A:W.609 Salt bridges: A:R.611 EPE.7: 11 residues within 4Å: Chain A: G.188, T.189, I.190, E.194, W.609, R.611, Y.612, G.613, E.614, L.624 Ligands: EPE.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.189, A:Y.612 Water bridges: A:I.190, A:W.609, A:W.609, A:W.609, A:W.609, A:E.614, A:F.615 Salt bridges: A:E.194, A:E.194, A:R.611

2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)

MGD.3: 42 residues within 4Å: Chain A: L.69, W.144, S.175, W.212, S.213, A.214, N.215, T.218, T.219, M.220, R.221, I.222, I.248, D.249, P.250, Q.251, S.253, V.266, T.268, A.269, D.271, G.349, W.350, G.351, M.352, R.354, Q.355, H.387, Y.388, V.671, P.673, H.674, P.675, Y.676, R.678, L.679, H.680, E.746, N.787 Ligands: MGD.4, MO.5, O.8 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:S.213, A:S.213, A:N.215, A:T.219, A:I.248, A:D.249, A:Q.251, A:A.269, A:W.350, A:G.351, A:Q.355, A:H.674, A:H.674, A:Y.676, A:R.678, A:H.680 Water bridges: A:D.271, A:R.354 Salt bridges: A:D.249, A:D.271, A:R.354, A:R.354, A:H.387, A:H.674, A:H.674 MGD.4: 39 residues within 4Å: Chain A: Y.142, G.143, W.144, F.145, S.146, S.153, Y.174, S.175, R.354, A.460, G.461, G.462, N.463, H.467, H.468, Q.469, N.487, E.488, V.489, N.490, T.492, A.504, T.505, R.510, D.540, T.672, H.674, L.679, H.680, S.681, Q.682, E.746, A.768, N.769, T.772, P.786 Ligands: MGD.3, MO.5, O.8 33 PLIP interactions: 33 interactions with chain A Hydrogen bonds: A:W.144, A:F.145, A:R.354, A:N.463, A:H.467, A:Q.469, A:N.487, A:E.488, A:R.510, A:R.510, A:T.672, A:H.674, A:L.679, A:S.681, A:S.681, A:Q.682, A:Q.682, A:E.746, A:N.769, A:N.769 Water bridges: A:S.146, A:N.463, A:N.490, A:T.492, A:D.540, A:H.680, A:H.680, A:N.787 Salt bridges: A:H.467, A:E.488, A:D.540, A:H.680, A:H.680

1 x MO: MOLYBDENUM ATOM(Non-covalent)

MO.5: 9 residues within 4Å: Chain A: Y.142, W.144, S.175, H.674, H.680 Ligands: EPE.1, MGD.3, MGD.4, O.8 Ligand excluded by PLIP

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: R.343, P.378 Ligand excluded by PLIP

1 x O: OXYGEN ATOM(Non-covalent)

O.8: 7 residues within 4Å: Chain A: Y.142, W.144, S.175 Ligands: EPE.1, MGD.3, MGD.4, MO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.144, A:S.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Struwe, M.A. et al., Active site architecture reveals coordination sphere flexibility and specificity determinants in a group of closely related molybdoenzymes. J.Biol.Chem. (2021)

Release Date

2021-04-21

Peptides

Trimethylamine-N-oxide reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Trimethylamine-N-oxide reductase

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