SMTL ID : 7l5r.1

Crystal Structure of the Oxacillin-hydrolyzing Class D Extended-spectrum Beta-lactamase OXA-14 from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: N.125, N.127 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.125, A:N.127 GOL.2: 2 residues within 4Å: Chain A: K.120, S.161 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.161 GOL.15: 3 residues within 4Å: Chain B: R.40, K.43, Y.45 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.43, B:K.43, B:D.222 Water bridges: B:G.21, B:D.37

22 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: S.49, S.97, K.187, T.188, G.189, F.190, R.232 Ligand excluded by PLIP SO4.4: 1 residues within 4Å: Chain A: R.142 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: S.163, K.164 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: L.157, N.158, K.164 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: T.62, R.113, K.116, Y.117 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: T.188, R.232, K.233 Ligand excluded by PLIP SO4.9: 2 residues within 4Å: Chain A: M.81, K.82 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain A: K.116, K.120 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain A: T.195, N.198 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain A: K.210, E.213, Y.215, G.244 Ligand excluded by PLIP SO4.13: 1 residues within 4Å: Chain A: Q.70 Ligand excluded by PLIP SO4.14: 1 residues within 4Å: Chain A: P.180 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: R.232, K.233 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain B: T.188, G.189, F.190, R.232 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain B: T.62, R.113, K.116, Y.117 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain B: K.116, K.120 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain A: E.165 Chain B: S.163, K.164 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain A: N.67, E.68, H.69 Chain B: L.157, N.158, K.164 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain B: G.110, E.111, V.112 Ligand excluded by PLIP SO4.23: 1 residues within 4Å: Chain B: P.180 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain B: S.1, N.2, K.31 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain B: S.129, G.130, G.131 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pincus, N.B. et al., Functional and Structural Characterization of OXA-935, a Novel OXA-10-Family beta-Lactamase from Pseudomonas aeruginosa. Antimicrob.Agents Chemother. (2022)

Release Date

2021-12-29

Peptides

Beta-lactamase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-lactamase

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