SMTL ID : 7l6v.1

Crystal structure of BoNT/A-LC-JPU-A5-JPU-C1-JPU-H7-JPU-D12-ciA-F12

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: K.46, I.120, E.153, Y.317, M.318, V.321 Chain F: F.104 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.46, A:E.153 Water bridges: A:Y.317 EDO.2: 3 residues within 4Å: Chain A: Q.316, N.320, E.330 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.320, A:E.330 Water bridges: A:K.323

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.228, H.232, E.267, Y.371 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.228, A:H.232, A:E.267, A:E.267, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lam, K.H. et al., Probing the structure and function of the protease domain of botulinum neurotoxins using single-domain antibodies. Plos Pathog. (2022)

Release Date

2021-12-22

Peptides

BoNT/A: A
JPU-C1: B
JPU-A5: C
JPU-H7: D
Single-domain antibody VHH ciA-F12: E
JPU-D12: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

BoNT/A

JPU-C1

JPU-A5

JPU-H7

Single-domain antibody VHH ciA-F12

JPU-D12

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