SMTL ID : 7l79.1 (1 other biounit)

Crystal structure of broadly HIV-1-neutralizing antibody VRC40.01

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

hetero-1-1-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: G.176, H.178, T.197 Chain B: N.137, N.138 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.178, A:T.197, H2O.2 ZN.2: 2 residues within 4Å: Chain B: K.149, E.195 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.195, B:E.195, H2O.2 ZN.3: 3 residues within 4Å: Chain B: D.185, K.188, H.189 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.185, B:D.185, B:H.189, H2O.2, H2O.2 ZN.4: 2 residues within 4Å: Chain B: V.58, D.60 No protein-ligand interaction detected (PLIP) ZN.5: 4 residues within 4Å: Chain A: V.183, S.193 Chain B: S.176, T.178 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.178 ZN.6: 1 residues within 4Å: Chain B: D.30 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.30, B:D.30, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, T., Crystal structure of broadly HIV-1-neutralizing antibody. Cell Rep (2021)

Release Date

2021-10-27

Peptides

Heavy chain of VRC40.01: A
Light chain of VRC40.01: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Heavy chain of VRC40.01

Light chain of VRC40.01

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