SMTL ID : 7l7e.4 (3 other biounits)

Crystal structure of SARS-CoV-2 spike RBD in complex with human monoclonal antibodies AZD8895 and AZD1061

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.44, E.46, W.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.44, A:W.47, A:W.47 PO4.2: 4 residues within 4Å: Chain B: S.30, H.91, G.93, S.94 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.30, B:S.94 Salt bridges: B:H.91

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain E: F.9, G.10, N.14, S.42 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.14, E:S.42, E:S.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Genetic and structural basis for SARS-CoV-2 variant neutralization by a two-antibody cocktail. Nat Microbiol (2021)

Release Date

2021-09-01

Peptides

heavy chain of human monoclonal antibody AZD8895: A
light chain of human monoclonal antibody Fab AZD8895: B
heavy chain of human monoclonal antibody Fab AZD1061: C
light chain of human monoclonal antibody Fab AZD1061: D
Spike protein S1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
O

D
P

E
K

heavy chain of human monoclonal antibody AZD8895

light chain of human monoclonal antibody Fab AZD8895

heavy chain of human monoclonal antibody Fab AZD1061

light chain of human monoclonal antibody Fab AZD1061

Spike protein S1

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