SMTL ID : 7l8k.1

Crystal structure of human GPX4-U46C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: G.150, I.151, T.161, R.174, G.176, P.177 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:I.151 Water bridges: A:R.174, A:R.174, A:G.176, A:G.176, A:G.176 Salt bridges: A:R.174 PO4.2: 3 residues within 4Å: Chain A: G.153, N.154, A.155 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.154, A:A.155 Water bridges: A:N.154

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: Q.99, F.100, N.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.131 Water bridges: A:Q.99, A:G.101 GOL.4: 5 residues within 4Å: Chain A: H.47, M.48, V.49, N.50, K.53 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.50, A:N.50, A:K.53 Water bridges: A:K.53

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 3 residues within 4Å: Chain A: F.114, G.117, Y.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.114, A:G.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., Patient-derived variant of GPX4 reveals the structural basis for its catalytic activity and degradation mechanism. Nat.Chem.Biol. (2021)

Release Date

2021-12-29

Peptides

Phospholipid hydroperoxide glutathione peroxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phospholipid hydroperoxide glutathione peroxidase

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