SMTL ID : 7l92.7 (7 other biounits)

C1B domain of Protein kinase C in complex with diacylglycerol and dodecyl 2-(trimethylammonio)ethyl phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.3, C.33, C.36, C.52 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.3, A:C.33, A:C.36, A:C.52 ZN.2: 4 residues within 4Å: Chain A: C.16, C.19, H.41, C.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.16, A:C.19, A:H.41, A:C.44

1 x DGA: DIACYL GLYCEROL(Non-covalent)

DGA.3: 11 residues within 4Å: Chain A: Y.10, M.11, S.12, P.13, T.14, L.22, L.23, W.24, G.25, L.26, Q.29 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.24, A:L.26 Hydrogen bonds: A:T.14, A:T.14, A:L.23, A:G.25, A:Q.29

1 x DPV: dodecyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)

DPV.4: 6 residues within 4Å: Chain A: D.17, H.18, G.20, S.21, L.22, W.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.21, A:L.22

1 x EOH: ETHANOL(Non-functional Binders)

EOH.5: 2 residues within 4Å: Chain A: K.32, E.34 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katti, S.S. et al., Structural anatomy of Protein Kinase C C1 domain interactions with diacylglycerol and other agonists. Nat Commun (2022)

Release Date

2022-05-04

Peptides

Protein kinase C delta type: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
S

Protein kinase C delta type

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