SMTL ID : 7l9j.1 (1 other biounit)

Crystal structure of the second bromodomain (BD2) of human BRD2 bound to Ro3280

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x 79C: 4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide(Non-covalent)

79C.1: 11 residues within 4Å: Chain A: W.29, P.30, F.31, V.35, L.40, L.42, Y.45, Y.87, N.88, H.92, V.94 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.40, A:V.94 Hydrogen bonds: A:N.88 Water bridges: A:P.30 pi-Stacking: A:W.29

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.78 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. (2021)

Release Date

2021-07-07

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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