SMTL ID : 7l9x.1

Structure of VPS4B in complex with an allele-specific covalent inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

monomer

Ligands

1 x XQV: N-{3-[(8-phenyl[1,2,4]triazolo[1,5-a]pyridin-2-yl)amino]phenyl}propanamide(Covalent)

XQV.1: 14 residues within 4Å: Chain A: C.137, V.138, A.139, G.179, T.180, G.181, Y.184, M.311, L.314, H.315, G.340, A.341, S.344 Ligands: SO4.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.314 Hydrogen bonds: A:C.137, A:A.139, A:Y.184 pi-Stacking: A:H.315

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: P.178, G.179, T.180, G.181, K.182, S.183 Ligands: XQV.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.179, A:T.180, A:G.181, A:K.182, A:S.183 Salt bridges: A:K.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cupido, T. et al., A chemical genetics approach to examine the functions of AAA proteins. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-04-14

Peptides

Vacuolar protein sorting-associated protein 4B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vacuolar protein sorting-associated protein 4B