SMTL ID : 7la5.1

Structure of human GGT1 in complex with Lnt1-172 compound.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 7 residues within 4Å: Chain A: N.68, T.71, R.120, H.121, R.123 Chain B: D.10, S.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.121 Water bridges: A:N.68, A:R.123, A:R.123 NAG.2: 6 residues within 4Å: Chain A: F.88, T.90, M.91, N.93, Q.97, L.103 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Q.97, A:L.103 Hydrogen bonds: A:M.91, A:N.93 Water bridges: A:M.91 NAG.3: 6 residues within 4Å: Chain A: E.313, V.314, N.317, F.322, F.323, Q.326 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.313, A:V.314 Hydrogen bonds: A:N.317, A:Q.326, A:Q.326 NAG.4: 4 residues within 4Å: Chain A: H.236, P.237, N.239, Y.248 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.248 Hydrogen bonds: A:H.236, A:N.239 Water bridges: A:N.239 NAG.7: 7 residues within 4Å: Chain A: T.336, P.338, I.339 Chain B: N.131, H.151, H.152, H.153 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:I.339 Hydrogen bonds: A:I.339, B:H.151, B:H.153

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.5: 6 residues within 4Å: Chain A: N.153, K.154 Chain B: L.22, Y.23, G.94, T.159 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.23 Water bridges: B:Q.96 pi-Cation interactions: B:Y.23 Salt bridges: A:K.154

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 6 residues within 4Å: Chain A: V.167, L.183, P.184, Q.185, L.186 Chain B: R.29 Ligand excluded by PLIP

1 x XSM: (2R)-4-borono-2-{[(1H-imidazol-4-yl)methyl]amino}butanoic acid(Covalent)

XSM.8: 15 residues within 4Å: Chain A: R.80 Chain B: T.1, T.19, N.21, L.22, E.40, D.43, F.53, S.71, S.72, M.73, G.93, G.94, T.95, I.97 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.1, B:T.19, B:E.40, B:D.43, B:S.72, B:S.72, B:G.93, B:G.94 Water bridges: B:D.43 Salt bridges: A:R.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Terzyan, S.S. et al., Structure of human GGT1 in complex with Lnt1-172 compound. To Be Published

Release Date

2022-01-12

Peptides

Glutathione hydrolase 1 heavy chain: A
Glutathione hydrolase 1 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione hydrolase 1 heavy chain

Glutathione hydrolase 1 light chain

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