SMTL ID : 7lbl.1

Structure of Human IgG1 Fc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- NAG- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUC.1: 17 residues within 4Å: Chain B: F.27, F.29, P.30, P.31, K.32, E.44, T.46, V.48, V.50, D.51, Q.81, Y.82, N.83, T.85, R.87 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUC.2, NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUC.2 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.82 Hydrogen bonds: B:F.29, B:K.32, B:E.44, B:E.44, B:T.46 NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUC.2: 17 residues within 4Å: Chain A: F.27, F.29, P.30, P.31, K.32, D.35, E.44, T.46, V.50, D.51, Q.81, Y.82, N.83, T.85, R.87 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUC.1, NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUC.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.82 Hydrogen bonds: A:F.29, A:K.32, A:K.32, A:D.35, A:E.44, A:E.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fields, J.K. et al., Silent Antibodies: Generation of Hyperglycosylated FCs to Ablate Effector Functions. To Be Published

Release Date

2021-01-20

Peptides

Ig gamma-1 chain C region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ig gamma-1 chain C region