- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-octamer
- Ligands
- 19 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 5 x ACY: ACETIC ACID(Non-functional Binders)
ACY.2: 4 residues within 4Å:- Chain A: R.90
- Chain B: R.142, W.143, E.146
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:R.142
- Salt bridges: A:R.90
ACY.5: 4 residues within 4Å:- Chain B: E.32, Q.35, R.39, Y.256
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:Y.256
- Salt bridges: B:R.39
ACY.17: 4 residues within 4Å:- Chain E: R.39, Y.256
- Chain G: I.5, Q.8
1 PLIP interactions:1 interactions with chain E- Salt bridges: E:R.39
ACY.18: 2 residues within 4Å:- Chain E: N.150, N.182
No protein-ligand interaction detected (PLIP)ACY.19: 5 residues within 4Å:- Chain E: N.113, T.121
- Chain F: R.110, G.135, S.136
4 PLIP interactions:2 interactions with chain F, 2 interactions with chain E- Water bridges: F:R.110
- Salt bridges: F:R.110
- Hydrogen bonds: E:N.113, E:T.121
- 11 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.4: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.9: 2 residues within 4Å:- Chain B: S.281, A.282
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:S.281
MG.13: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.23: 1 residues within 4Å:- Chain E: G.198
No protein-ligand interaction detected (PLIP)MG.28: 1 residues within 4Å:- Chain F: W.199
No protein-ligand interaction detected (PLIP)MG.32: 3 residues within 4Å:- Chain C: N.113, T.121
- Chain G: R.110
No protein-ligand interaction detected (PLIP)MG.33: 1 residues within 4Å:- Chain G: G.198
No protein-ligand interaction detected (PLIP)MG.34: 1 residues within 4Å:- Chain G: H.87
No protein-ligand interaction detected (PLIP)MG.35: 1 residues within 4Å:- Chain H: W.199
No protein-ligand interaction detected (PLIP)MG.36: 1 residues within 4Å:- Chain H: T.228
No protein-ligand interaction detected (PLIP)MG.37: 1 residues within 4Å:- Chain H: E.52
No protein-ligand interaction detected (PLIP)- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S. et al., Structure and Mechanism of d-Glucosaminate-6-phosphate Ammonia-lyase: A Novel Octameric Assembly for a Pyridoxal 5'-Phosphate-Dependent Enzyme, and Unprecedented Stereochemical Inversion in the Elimination Reaction of a d-Amino Acid. Biochemistry (2021)
- Release Date
- 2021-06-09
- Peptides
- Putative selenocysteine synthase (L-seryl-tRNA(Ser) selenium transferase): ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-octamer
- Ligands
- 19 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 5 x ACY: ACETIC ACID(Non-functional Binders)
- 11 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S. et al., Structure and Mechanism of d-Glucosaminate-6-phosphate Ammonia-lyase: A Novel Octameric Assembly for a Pyridoxal 5'-Phosphate-Dependent Enzyme, and Unprecedented Stereochemical Inversion in the Elimination Reaction of a d-Amino Acid. Biochemistry (2021)
- Release Date
- 2021-06-09
- Peptides
- Putative selenocysteine synthase (L-seryl-tRNA(Ser) selenium transferase): ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H