SMTL ID : 7lci.1

PF 06882961 bound to the glucagon-like peptide-1 receptor (GLP-1R):Gs complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x UK4: 2-[(4-{6-[(4-cyano-2-fluorophenyl)methoxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-{[(2S)-oxetan-2-yl]methyl}-1H-benzimidazole-6-carboxylic acid(Non-covalent)

UK4.1: 21 residues within 4Å: Chain A: S.40, L.41, W.42, V.45, Q.46, E.147, L.150, K.206, L.210, W.212, S.215, T.216, L.226, Q.230, F.239, M.242, C.305, T.307, R.389, F.390, L.393 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.41, A:W.42, A:V.45, A:E.147, A:L.150, A:W.212, A:W.212, A:L.226, A:F.239, A:F.239, A:T.307, A:F.390, A:L.393 Hydrogen bonds: A:Q.46, A:K.206, A:Q.230 Water bridges: A:Q.243 Salt bridges: A:R.389 pi-Cation interactions: A:W.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Evolving cryo-EM structural approaches for GPCR drug discovery. Structure (2021)

Release Date

2021-01-20

Peptides

Glucagon-like peptide 1 receptor: A
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
G

Membrane

We predict this structure to be a membrane protein.
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Glucagon-like peptide 1 receptor

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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