SMTL ID : 7ldj.1 (3 other biounits)

SARS-CoV-2 receptor binding domain in complex with WNb-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- FUL: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUL.1: 3 residues within 4Å: Chain A: G.9, N.13, L.38 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 4 residues within 4Å: Chain B: V.12, Q.13, G.16, S.17 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.13, B:S.17, B:S.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pymm, P. et al., SARS-CoV-2 receptor binding domain in complex with WNb-2. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-05-05

Peptides

Spike glycoprotein: A
Nanobody 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

Spike glycoprotein

Nanobody 2

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