SMTL ID : 7lej.1

Crystal structure of the second bromodomain (BD2) of human BRDT bound to Volasertib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x IBI: N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide(Non-covalent)

IBI.1: 12 residues within 4Å: Chain A: W.37, P.38, F.39, V.43, L.48, L.50, Y.53, C.92, Y.95, N.96, H.100, V.102 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.43, A:L.48, A:L.50, A:Y.53, A:Y.95 Hydrogen bonds: A:N.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. (2021)

Release Date

2021-07-14

Peptides

Bromodomain testis-specific protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain testis-specific protein