SMTL ID : 7lek.1 (3 other biounits)

Crystal structure of the second bromodomain (BD2) of human BRDT bound to ERK5-IN-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x VYJ: 11-cyclopentyl-2-({2-ethoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one(Non-covalent)

VYJ.1: 12 residues within 4Å: Chain A: W.32, P.33, F.34, V.38, L.43, L.45, C.87, Y.90, N.91, H.95, V.97, M.100 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.32, A:P.33, A:L.43, A:L.45, A:L.45, A:Y.90, A:Y.90, A:V.97 Hydrogen bonds: A:N.91 pi-Cation interactions: A:H.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. (2021)

Release Date

2021-07-14

Peptides

Bromodomain testis-specific protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain testis-specific protein

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