SMTL ID : 7lfu.1

Crystal structure of the SARS CoV-1 Papain-like protease in complex with peptide inhibitor VIR250

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x ACE- UB4- DPP- GLY- GVE: Papain-like protease peptide inhibitor VIR250(Non-covalent)

ACE-UB4-DPP-GLY-GVE.1: 16 residues within 4Å: Chain A: N.110, C.112, Y.113, L.163, G.164, D.165, E.168, P.248, P.249, Y.265, Y.269, Q.270, C.271, G.272, H.273, Y.274 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:P.248, A:P.249, A:Y.265, A:Y.269, A:Y.269 Hydrogen bonds: A:G.164, A:G.164, A:D.165, A:D.165, A:Y.265, A:Y.265, A:Y.269, A:G.272, A:G.272 Salt bridges: A:H.273 pi-Stacking: A:Y.265, A:Y.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patchett, S. et al., A molecular sensor determines the ubiquitin substrate specificity of SARS-CoV-2 papain-like protease. Cell Rep (2021)

Release Date

2021-11-10

Peptides

papain-like protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

papain-like protease

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