SMTL ID : 7lg4.1

Green fluorescent protein from Aequorea macrodactyla - amacGFP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: D.194 Ligands: EDO.4 No protein-ligand interaction detected (PLIP) EDO.2: 6 residues within 4Å: Chain A: E.99, R.100, T.101, Y.186, Q.187, T.188 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.101 Water bridges: A:T.112 EDO.3: 5 residues within 4Å: Chain A: M.157, V.167, N.168, Q.187, T.188 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.187, A:Q.187 EDO.4: 2 residues within 4Å: Chain A: D.194 Ligands: EDO.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.194 EDO.5: 7 residues within 4Å: Chain A: Y.45, G.46, R.77, Q.208, F.227, F.228, S.229 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.208, A:F.228

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 6 residues within 4Å: Chain A: S.151, H.152, N.153, Y.155, F.169, K.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.153, A:K.170

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain A: E.23, L.24, D.25, S.34, I.127 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.23, A:D.25, A:D.25, A:D.25, A:I.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez Somermeyer, L. et al., Heterogeneity of the GFP fitness landscape and data-driven protein design. Elife (2022)

Release Date

2021-01-27

Peptides

Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Green fluorescent protein