SMTL ID : 7lgk.1 (1 other biounit)

Crystal structure of soluble guanylate cyclase activator runcaciguat (BAY 1101042) bound to nostoc H-NOX domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x XZ7: Runcaciguat(Non-covalent)

XZ7.1: 23 residues within 4Å: Chain A: M.1, V.5, W.74, T.78, Y.83, L.87, F.97, L.101, L.104, H.105, V.108, L.115, R.116, P.118, F.120, Y.134, S.136, R.138, L.141, M.144, L.148 Ligands: CL.2, GOL.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.5, A:F.97, A:L.104, A:V.108, A:P.118, A:L.141 Hydrogen bonds: A:H.105, A:S.136 Salt bridges: A:R.138

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: L.115, R.116, R.138 Ligands: XZ7.1, GOL.4 Ligand excluded by PLIP

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: Y.2, L.4, W.74, V.108, F.112 Ligands: XZ7.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.2 GOL.4: 9 residues within 4Å: Chain A: M.1, Y.2, A.42, Y.43, D.45, Q.114, R.116, R.138 Ligands: CL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.2, A:Y.43, A:R.116, A:R.138 GOL.5: 6 residues within 4Å: Chain A: M.12, H.16, H.17, K.61, L.66, A.69 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.12, A:H.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hahn, M.G. et al., Discovery of the Soluble Guanylate Cyclase Activator Runcaciguat (BAY 1101042). J.Med.Chem. (2021)

Release Date

2021-05-05

Peptides

H-NOX domain protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

H-NOX domain protein

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