SMTL ID : 7lht.1

Structure of the LRRK2 dimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 13 residues within 4Å: Chain A: G.1344, S.1345, G.1346, K.1347, T.1348, T.1349, Q.1365, T.1368, T.1452, H.1453, N.1489, A.1490, T.1491 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.1345, A:K.1347, A:T.1348, A:T.1349, A:T.1349, A:T.1368, A:N.1489 Salt bridges: A:K.1347 pi-Cation interactions: A:H.1453 GDP.3: 17 residues within 4Å: Chain B: T.1343, G.1344, S.1345, G.1346, K.1347, T.1348, T.1349, Q.1365, A.1367, T.1368, F.1395, G.1397, T.1452, H.1453, N.1489, A.1490, T.1491 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.1343, B:G.1344, B:S.1345, B:K.1347, B:T.1348, B:T.1368, B:F.1395, B:G.1397 Salt bridges: B:K.1347 pi-Cation interactions: B:H.1453

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 13 residues within 4Å: Chain A: D.1887, G.1888, G.1891, S.1892, V.1893, A.1904, M.1947, E.1948, L.1949, A.1950, S.1954, H.1998, L.2001 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.1888, A:S.1892, A:E.1948, A:A.1950, A:S.1954 Salt bridges: A:K.1906, A:H.1998 ATP.4: 11 residues within 4Å: Chain B: D.1887, G.1888, S.1892, V.1893, M.1947, E.1948, L.1949, A.1950, S.1954, H.1998, L.2001 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.1948, B:A.1950 Salt bridges: B:K.1906

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Myasnikov, A. et al., Structural analysis of the full-length human LRRK2. Cell (2021)

Release Date

2021-06-16

Peptides

Leucine-rich repeat serine/threonine-protein kinase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Leucine-rich repeat serine/threonine-protein kinase 2

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