SMTL ID : 7lir.1 (1 other biounit)

Structure of the invertebrate ALK GRD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN- MAN- FUC- FUC: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-FUC-FUC.1: 5 residues within 4Å: Chain A: Q.175, C.177, N.178, E.179, K.182 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.175

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain A: Y.228, S.244, N.245 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 1 residues within 4Å: Chain A: N.325 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC: alpha-L-fucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.3: 3 residues within 4Å: Chain A: R.285, C.294, N.301 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.285, A:R.285

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: S.112, C.113, S.114, S.117 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.114, A:S.114 Water bridges: A:H.118, A:N.119 SO4.6: 5 residues within 4Å: Chain A: S.64, N.65, S.66, Y.120, D.123 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.65, A:Y.120 Water bridges: A:S.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, T. et al., Structural basis for ligand reception by anaplastic lymphoma kinase. Nature (2021)

Release Date

2021-11-24

Peptides

ALK tyrosine kinase receptor homolog scd-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ALK tyrosine kinase receptor homolog scd-2

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