SMTL ID : 7lit.4 (4 other biounits)

Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S7G

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x RBF: RIBOFLAVIN(Non-covalent)

RBF.1: 3 residues within 4Å: Chain A: W.87, D.90, R.94 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.87 Hydrogen bonds: A:D.90, A:R.94, A:R.94 pi-Stacking: A:W.87, A:W.87, A:W.87 RBF.2: 7 residues within 4Å: Chain A: K.66 Chain B: W.87, D.90, R.94 Chain C: E.77, R.79, E.228 13 PLIP interactions: 8 interactions with chain B, 4 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: B:W.87, A:K.66 Hydrogen bonds: B:D.90, B:D.90, B:R.94, B:R.94, C:R.79, C:R.79, C:E.228 pi-Stacking: B:W.87, B:W.87, B:W.87 pi-Cation interactions: C:R.79 RBF.3: 7 residues within 4Å: Chain C: W.87, D.90, R.94 Chain D: K.66 Chain F: E.77, R.79, E.228 13 PLIP interactions: 8 interactions with chain C, 1 interactions with chain D, 4 interactions with chain F Hydrophobic interactions: C:W.87, D:K.66 Hydrogen bonds: C:D.90, C:D.90, C:R.94, C:R.94, F:R.79, F:R.79, F:E.228 pi-Stacking: C:W.87, C:W.87, C:W.87 pi-Cation interactions: F:R.79 RBF.4: 3 residues within 4Å: Chain D: W.87, D.90, R.94 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:W.87 Hydrogen bonds: D:D.90, D:D.90, D:R.94, D:R.94 pi-Stacking: D:W.87, D:W.87, D:W.87 RBF.5: 3 residues within 4Å: Chain E: W.87, D.90, R.94 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:W.87 Hydrogen bonds: E:D.90, E:R.94, E:R.94 pi-Stacking: E:W.87, E:W.87, E:W.87 RBF.6: 7 residues within 4Å: Chain B: E.77, R.79, E.228 Chain E: K.66 Chain F: W.87, D.90, R.94 12 PLIP interactions: 4 interactions with chain B, 7 interactions with chain F, 1 interactions with chain E Hydrogen bonds: B:R.79, B:R.79, B:E.228, F:D.90, F:R.94, F:R.94 pi-Cation interactions: B:R.79 Hydrophobic interactions: F:W.87, E:K.66 pi-Stacking: F:W.87, F:W.87, F:W.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adamson, L.S.R. et al., Pore structure controls stability and molecular flux in engineered protein cages. Sci Adv (2022)

Release Date

2022-02-09

Peptides

Maritimacin: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Maritimacin

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