SMTL ID : 7liw.1

Local refinement of human ATP citrate lyase E599Q mutant ASH domain

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain B: V.56, K.58, R.65, R.66, G.67, E.108, P.109, F.110, V.111, H.113, E.118, G.139, N.203, P.204, L.215, D.216 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.58, B:R.65, B:R.66, B:G.67, B:E.108, B:E.108, B:V.111, B:E.118, B:N.203 Salt bridges: B:R.66

1 x COA: COENZYME A(Non-covalent)

COA.2: 22 residues within 4Å: Chain B: G.261, G.309, F.347, F.533, F.572, A.573, S.574, R.576, S.577, I.597, Q.599, A.624, T.625, V.626 Chain D: K.964, L.969, I.970, I.973, K.1017, K.1018, L.1021 Ligands: Y2A.3 12 PLIP interactions: 6 interactions with chain D, 6 interactions with chain B Hydrogen bonds: D:I.970, D:I.970, B:S.574, B:S.577, B:I.597 Salt bridges: D:K.964, D:K.1017, D:K.1018, D:K.1018, B:R.576 Hydrophobic interactions: B:F.347, B:F.572

1 x Y2A: (2S)-2-hydroxy-2-[2-oxo-2-(phosphonooxy)ethyl]butanedioic acid(Non-covalent)

Y2A.3: 17 residues within 4Å: Chain B: A.280, G.281, G.282, G.283, S.308, G.309, S.343, A.345, N.346, F.347, T.348, R.379, S.663, G.664, G.665, H.760 Ligands: COA.2 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:G.282, B:G.283, B:S.343, B:S.343, B:N.346, B:N.346, B:F.347, B:T.348, B:T.348, B:R.379, B:G.664, B:G.665, B:M.666 Salt bridges: B:R.379, B:H.760

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, X. et al., Reply to: Acetyl-CoA is produced by the citrate synthase homology module of ATP-citrate lyase. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-05-19

Peptides

ATP-citrate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ATP-citrate synthase

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